Mathematical modeling

Epidemiology and control of SARS-CoV-2 epidemics in partially vaccinated populations

Bosetti P, Tran Kiem C, Andronico A, Colizza V, Yazdanpanah Y, Fontanet A, Benamouzig D, Cauchemez S Background: Vaccination is expected...

Model-based assessment of Chikungunya and O’nyong-nyong virus circulation

Nature communications Hozé N, Diarra I, Sangaré AK, Pastorino B, Pezzi L, Kouriba B, Sagara I, Dabo A, Djimdé A, Thera MA, Doumbo OK, de...

Evolution of outcomes for patients hospitalised during the first 9 months of the SARS-CoV-2 pandemic

Published in The Lancet Regional Health – Europe Lefrancq N, Paireau J, Hozé N, Courtejoie N, Yazdanpanah Y, Bouadmaeg L, Boëlle PY,...

Drivers of ESBL-producing Escherichia coli dynamics in calf fattening farms: A modelling study

One Health Bastard J, Haenni M, Gay E, Glaser P, Madec JY, Temime, L Opatowski L The contribution of bacteria in livestock to the global...

Monitoring the proportion of the population infected by SARS-CoV-2

The Lancet Public Health Hozé N, Paireau J, Lapidus N, Tran Kiem C, Salje H, Gianluca Severi, Touvier M, Zins M, de Lamballerie X,...

Evaluating the impact of curfews and other measures on SARS-CoV-2 transmission in French Guiana

Nat Commun Andronico A, Tran Kiem C, Paireau J, Succo T, Bosetti P, Lefrancq N, Nacher M, Djossou F, Sanna A, Flamand C, Salje H,...

Impact of mass testing during an epidemic rebound of SARS-CoV-2: a modelling study

Euro Surveill Bosetti P, Tran Kiem C, Yazdanpanah Y, Fontanet A, Lina B, Colizza V, Cauchemez S We used a mathematical model to evaluate...

Age-specific mortality and immunity patterns of SARS-CoV-2

Published in Nature O’Driscoll M, Dos Santos GR, Wang L, Cummings DAT, Azman AS, Paireau J, Fontanet A, Cauchemez S, Salje H Estimating...

Age-specific mortality and immunity patterns of SARS-CoV-2

Nature O’Driscoll M, Dos Santos GR, Wang L, Cummings DAT, Azman AS, Paireau J, Fontanet A, Cauchemez S, Salje H Estimating the size of...

Cluster of COVID-19 in northern France: A retrospective closed cohort study

MedRXiv Arnaud Fontanet, Laura Tondeur, Yoann Madec, Rebecca Grant, Camille Besombes, Nathalie Jolly, Sandrine Fernandes Pellerin,...

Dynamics of livestock-associated methicillin resistant Staphylococcus aureus in pig movement network

Epidemics Bastard J, Andraud M, Chauvin C, Glaser P, Opatowski L, Temime L. Livestock-associated methicillin resistant Staphylococcus...

Improved inference of time-varying reproduction numbers during infectious disease outbreaks

Epidemics R.N. Thompson, J.E. Stockwin, R.D. van Gaalen, J.A. Polonsky, Z.N. Kamvar, P.A. Demarsh, E. Dahlqwist, S. Li, E. Miguel, T....

Assessing Zika Virus Transmission Within Households During an Outbreak in Martinique, 2015-2016

American Journal of Epidemiology Anthony Cousien, Sylvie Abel, Alice Monthieux, Alessio Andronico, Isabelle Calmont, Minerva Cervantes,...

Spatio-temporal dynamics of dengue in Brazil: Seasonal travelling waves

PLoS Neglected Tropical Diseases Churakov M, Villabona-Arenas CJ, Kraemer MUG, Salje H, Cauchemez S. Dengue continues to be the most...