Quicksom: Self-Organizing Maps on GPUs for clustering of molecular dynamics trajectories
Published in Bioinformatics Mallet V, Nilges M, Bouvier G Summary: We implemented the Self-Organizing Maps algorithm running efficiently...
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- Mar 1, 2021
PanACoTA: a modular tool for massive microbial comparative genomics
NAR Genomics and Bioinformatics Perrin A, Rocha EPC The study of the gene repertoires of microbial species, their pangenomes, has become...
- Nov 23, 2020
Cell Tracking Profiler: a user-driven analysis framework for evaluating 4D live cell imaging data
J Cell Sci Mitchell C, Caroff L, Solis-Lemus JA, Reyes-Aldasoro CC, Warburton F, de Chaumont F, Dufour A, Dallongeville S, Olivo-Marin...
- Sep 20, 2020
Genuage: visualizing and analyzing multidimensional point cloud data in virtual reality
Nature Methods Thomas Blanc, Mohamed El Beheiry, Clément Caporal, Jean-Baptiste Masson, Bassam Hajj. The quantity of experimentally...
- Jul 1, 2020
ARIAweb: a server for automated NMR structure calculation
Nucleic Acids Res Fabrice Allain, Fabien Mareuil, Hervé Ménager, Michael Nilges, Benjamin Bardiaux. Nuclear magnetic resonance (NMR)...
- Jun 30, 2020
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing
Brief Bioinform Lima L, Marchet C, Caboche S, da Silva C, Istace B, Aury JM, Touzet H, Chikhi R Motivation Nanopore long-read sequencing...
- Jun 30, 2020
REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets
Bioinformatics Marchet C, Iqbal Z, Gautheret D, Salson M, Chikhi R. Motivation: In this work we present REINDEER, a novel computational...
- May 31, 2020
Yacrd and fpa: upstream tools for long-read genome assembly
Bioinformatics Pierre Marijon, Rayan Chikhi, Jean-Stéphane Varré Motivation: Genome assembly is increasingly performed on long,...
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