Apr 29, 2022kmtricks: efficient and flexible construction of Bloom filters for large sequencing data collectionsBioinformatics Advances Téo Lemane, Paul Medvedev, Rayan Chikhi, Pierre Peterlongo When indexing large collections of short-read...
Jul 15, 2021Quicksom: Self-Organizing Maps on GPUs for clustering of molecular dynamics trajectoriesPublished in Bioinformatics Mallet V, Nilges M, Bouvier G Summary: We implemented the Self-Organizing Maps algorithm running efficiently...
Mar 1, 2021PanACoTA: a modular tool for massive microbial comparative genomicsNAR Genomics and Bioinformatics Perrin A, Rocha EPC The study of the gene repertoires of microbial species, their pangenomes, has become...
Nov 23, 2020Cell Tracking Profiler: a user-driven analysis framework for evaluating 4D live cell imaging dataJ Cell Sci Mitchell C, Caroff L, Solis-Lemus JA, Reyes-Aldasoro CC, Warburton F, de Chaumont F, Dufour A, Dallongeville S, Olivo-Marin...
Sep 21, 2020Genuage: visualizing and analyzing multidimensional point cloud data in virtual realityNature Methods Thomas Blanc, Mohamed El Beheiry, Clément Caporal, Jean-Baptiste Masson, Bassam Hajj. The quantity of experimentally...