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Statistical signature of subtle behavioral changes in large-scale assays
PLOS Computational Biology Alexandre Blanc, François Laurent, Alex Barbier-Chebbah, Hugues Van Assel, Benjamin T. Cocanougher, Benjamin...
Apr 21, 2025
scPRINT: pre-training on 50 million cells allows robust gene network predictions
Nature Communications Jérémie Kalfon, Jules Samaran, Gabriel Peyré & Laura Cantini Summary A cell is governed by the interaction of...
Apr 15, 2025
How does date-rounding affect phylodynamic inference for public health?
PLOS Computational Biology Leo A. Featherstone, Danielle J. Ingle, Wytamma Wirth, Sebastian Duchene Summary Phylodynamic analyses...
Apr 10, 2025
An Ancient Epstein-Barr Virus Genome Recovered From a Museum Penis Sheath From Papua
The Journal of Infectious Diseases Anaïs Augias, Gabriel Yaxal Ponce-Soto, Amélie Chimènes, Philippe Charlier, Nicolás Rascovan Summary...
Apr 8, 2025
Efficient and robust search of microbial genomes via phylogenetic compression
Nature Methods Karel Břinda, Leandro Lima, Simone Pignotti, Natalia Quinones-Olvera, Kamil Salikhov, Rayan Chikhi, Gregory Kucherov,...
Apr 8, 2025
Adaptive genomic plasticity in large-genome, broad-host–range vibrio phages
The ISME Journal Charles Bernard, Yannick Labreuche, Carine Diarra, Pauline Daszkowski, Karine Cahier, David Goudenège, Martin G...
Apr 3, 2025
Statistical analysis of spatial patterns in tumor microenvironment images
Nature Communications Mohamed M. Benimam, Vannary Meas-Yedid, Suvadip Mukherjee, Astri Frafjord, Alexandre Corthay, Thibault Lagache &...
Mar 30, 2025
The Spread of Antibiotic Resistance Is Driven by Plasmids Among the Fastest Evolving and of Broadest Host Range
Molecular Biology and Evolution Charles Coluzzi, Eduardo P C Rocha Summary Microorganisms endure novel challenges for which other...
Mar 18, 2025
Identifying chronic obstructive pulmonary disease subtypes using multi-trait genetics
eBioMedicine Andrey Ziyatdinov, Brian D. Hobbs, Samir Kanaan-Izquierdo, Matthew Moll, Phuwanat Sakornsakolpat, Nick Shrine, Jing Chen,...
Mar 12, 2025
Variation in wood density across South American tropical forests
Nature Communications Martin J. P. Sullivan, Oliver L. Phillips, {...} Pieter A. Zuidema &Joeri A. Zwerts Summary Wood density is a...
Mar 10, 2025
Continuous replenishment of the dysfunctional CD8 T cell axis is associated with response to chemoimmunotherapy in advanced breast cancer
Cell Reports Medicine Christina Metoikidou, Vadim Karnaukhov, Bram Boeckx, Eleonora Timperi, Pierre-Emmanuel Bonté, Ling Wang,...
Feb 20, 2025
Evolution of social contacts patterns in France over the SARS-CoV-2 pandemic: results from the SocialCov survey
BMC Infectious Diseases Flora Soussand, Armiya Youssouf Abdou, Marie Sanchez, Bich-Tram Huynh, Coralie Giese, Cécile Tran-Kiem, Guillaume...
Feb 14, 2025
Structural insights into tecovirimat antiviral activity and poxvirus resistance
Nature Microbiology Riccardo Vernuccio, Alejandro Martínez León, Chetan S. Poojari, Julian Buchrieser, Christopher N. Selverian, Yakin...
Feb 12, 2025
Factors Associated With the Transmission of the Delta Severe Acute Respiratory Syndrome Coronavirus 2 Variant in Households: The Israeli COVID-19 Family Study (ICoFS)
The Journal of Infectious Diseases Thomas Cortier, Mayan Gilboa, Maylis Layan, Gili Joseph, Lilac Meltzer, Sharon Amit, Carmit Rubin,...
Feb 8, 2025
RSero: A user-friendly R package to reconstruct pathogen circulation history from seroprevalence studies
PLOS Computational Biology Nathanaël Hozé, Margarita Pons-Salort, C. Jessica E. Metcalf, Michael White, Henrik Salje, Simon...
Feb 3, 2025
Neural circuits underlying context-dependent competition between defensive actions in Drosophila larvae
Nature Communications Maxime Lehman, Chloé Barré, Md Amit Hasan, Benjamin Flament, Sandra Autran, Neena Dhiman, Peter Soba, Jean-Baptiste...
Jan 28, 2025
Analysis of metagenomic data
Nature Reviews Methods Primers Shaopeng Liu, Judith S. Rodriguez, Viorel Munteanu, Cynthia Ronkowski, Nitesh Kumar Sharma, Mohammed...
Jan 23, 2025
Monitoring SARS-CoV-2 variants with complementary surveillance systems: risk evaluation of the Omicron JN.1 variant in France, August 2023 to January 2024
Eurosurveillance Adriana Traore, Kelly Charniga, Sophie Grellet, Garance Terpant, Héléna Da Cruz, Anais Lamy, Nathalie Thomas, Gwladys...
Jan 9, 2025
Correlates of Protection Against Symptomatic COVID-19: The CORSER 5 Case–Control Study
Open Forum Infectious Diseases Léopold Beeker, Thomas Obadia, Emma Bloch, Laura Garcia, Manon Le Fol, Tiffany Charmet, Laurence Arowas,...
Jan 8, 2025
Spatiotemporal dynamics of fetal liver hematopoietic niches
JEM Márcia Mesquita Peixoto, Francisca Soares-da-Silva, Valentin Bonnet, Yanping Zhou, Gustave Ronteix, Rita Faria Santos, Marie-Pierre...
Jan 7, 2025
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