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Harnessing CRISPR interference to resensitize laboratory strains and clinical isolates to last resort antibiotics
Scientific Reports Angelica Frusteri Chiacchiera, Michela Casanova, Massimo Bellato, Aurora Piazza, Roberta Migliavacca, Gregory Batt,...
Jan 2, 2025
Differential stress responsiveness determines intraspecies virulence heterogeneity and host adaptation in Listeria monocytogenes
Nature Microbiology Lukas Hafner, Enzo Gadin, Lei Huang, Arthur Frouin, Fabien Laporte, Charlotte Gaultier, Afonso Vieira, Claire Maudet,...
Nov 26, 2024
Assessing the effect of model specificationand prior sensitivity on Bayesian tests oftemporal signal
PLOS COMPUTATIONAL BIOLOGY John H. Tay, Arthur Kocher, Sebastian Duchene* Abstract Our understanding of the evolution of many microbes...
Nov 20, 2024
Expanding the diversity of origin of transfer-containing sequences inmobilizable plasmids
Nature Microbiology Manuel Ares-Arroyo, Amandine Nucci & Eduardo P. C. Rocha Abstract Conjugative plasmids are important drivers of...
Nov 14, 2024
Integrating information from historical datainto mechanistic models for influenzaforecasting
PLOS COMPUTATIONAL BIOLOGY Alessio Andronico, Juliette Paireau*, Simon Cauchemez Abstract Seasonal influenza causes significant annual...
Nov 5, 2024
Rifaximin prophylaxis causes resistance to the last-resort antibiotic daptomycin
Nature Adrianna M. Turner, Lucy Li, Ian R. Monk, Jean Y. H. Lee, Danielle J. Ingle, Stephanie Portelli, Norelle L. Sherry, Nicole Isles,...
Nov 5, 2024
Emergence of the B.1.214.2 SARS‑CoV‑2 lineage with an Omicron‑like spike insertion and a unique upper airway immune signature
BMC Infectious Diseases Andrew Holtz*†, Johan Van Weyenbergh*†, Samuel L. Hong, Lize Cuypers, Áine O’Toole, Gytis Dudas, Marco Gerdol,...
Oct 15, 2024
Longitudinal genomic analysis of Neisseria gonorrhoeae transmission dynamics in Australia
Nature Communications Mona L. Taouk, George Taiaroa, Sebastian Duchene, Soo Jen Low, Charlie K. Higgs, Darren Y. J. Lee, Shivani...
Sep 24, 2024
Antigenic sin and multiple breakthrough infectionsdrive converging evolution of COVID-19 neutralizingresponses
Cell Reports Ida Paciello, Giulio Pierleoni, Elisa Pantano, Giada Antonelli, Piero Pileri, Giuseppe Maccari, Dario Cardamone, Giulia...
Sep 17, 2024
A Genetic Bridge Between Medicine and Neurodiversity for Autism
Annual Review of Genetics Claire S. Leblond, Thomas Rolland, Eli Barthome, Zakaria Mougin, Mathis Fleury, Christine Ecker, Stéf...
Sep 11, 2024
Risk of SARS-CoV-2 infection in professional settings, shops, shared transport, and leisure activities in France, 2020–2022
BMC Public Health Simon Galmiche*, Tiffany Charmet, Arthur Rakover, Olivia Chény, Faïza Omar, Christophe David, Alexandra Mailles,...
Sep 10, 2024
scConfluence: single-cell diagonal integration with regularized Inverse Optimal Transport on weakly connected features
Nature Communications Jules Samaran, Gabriel Peyré & Laura Cantini Summary The abundance of unpaired multimodal single-cell data has...
Sep 9, 2024
Hijackers, hitchhikers, or co-drivers? Themysteries of mobilizable genetic elements
PLOS Biology Manuel Ares-Arroyo, Charles Coluzzi, Jorge A. Moura de Sousa, Eduardo P. C. Rocha* Abstract Mobile genetic elements shape...
Sep 5, 2024
CellTracksColab is a platform that enables compilation, analysis, and exploration of cell tracking data
PLOS Biology Estibaliz Gomez-de-Mariscal, Hanna Grobe, Joanna W. Pylvanainen, Laura Xenard, Ricardo Henriques, Jean-Yves Tinevez,...
Sep 4, 2024
Three-dimensional cell cultureconditions promoted theMesenchymal-AmoeboidTransition in the Triple-NegativeBreast Cancer cell line MDAMB-231
Frontiers in Cell and Developmental Biology Daniela Rodríguez-Cruz, Aleix Boquet-Pujadas, Eunice López-Muñoz, Ruth Rincón-Heredia,...
Aug 7, 2024
Fibronectin induces a transition fromamoeboid to a fan morphology and modifiesmigration in Entamoeba histolytica
PLOS PATHOGENS Maria Manich, Pascal Bochet, Aleix Boquet-Pujadas, Thierry Rose, Gertjan Laenen, Nancy Guillen, Jean-Christophe...
Aug 6, 2024
Trait selection strategy in multi-traitGWAS: Boosting SNP discoverability
HGG Advances Yuka Suzuki*, Hervé Ménager, Bryan Brancotte, Raphael Vernet, Cyril Nerin, Christophe Boetto, Antoine Auvergne, Christophe...
Aug 5, 2024
Transformation of spatial representations alonghippocampal circuits
iScience Bérénice Gandit, Lorenzo Posani, Chun-Lei Zhang, Soham Saha, Cantin Ortiz, Manuela Allegra* and Christoph Schmidt-Hieber*...
Aug 1, 2024
Zanamivir and baloxavir combination to cure persistent influenza and coronavirus infections after hematopoietic stem cell transplant
International Journal of Antimicrobial Agents Victor Euzen ∗, Aliénor Xhaard ∗, Samar Berreira-Ibraim ∗, Laure Deville, Aude Quentin,...
Jul 29, 2024
In Vitro and In Vivo Neutralizing Efficacy of Monoclonal Antibodies Against Sars-Cov-2 Variants in KidneyTransplant Recipients
Transplant International Ilies Benotmane*†, Martin Jungbauer-Groznica†, Isabelle Staropoli, Delphine Planas, Océane Dehan, Angela...
Jul 28, 2024
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