Domain Adapted Multitask Learning for Segmenting Amoeboid Cells in Microscopy
IEEE TRANSACTIONS ON MEDICAL IMAGING Suvadip Mukherjee, Rituparna Sarkar, Maria Manich, Elisabeth Labruyère and Jean-Christophe...
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Efficient mapping of accurate long reads in minimizerspace with mapquik
Genome Research Bariş Ekim, Kristoffer Sahlin, Paul Medvedev, Bonnie Berger and Rayan Chikhi Abstract DNA sequencing data continue to...
Comparing methods for constructing and representing human pangenome graphs
Genome Biology Francesco Andreace, Pierre Lechat, Yoann Dufresne and Rayan Chikhi Abstract Background: As a single reference genome...
Divergent adaptive immuneresponses define two types oflong COVID
Frontiers in Immunology Jerome Kervevan, Isabelle Staropoli, Dorsaf Slama, Raphaël Jeger-Madiot, Francoise Donnadieu, Delphine Planas,...
Interrogating Aptamer Chemical Space Through ModifiedNucleotide Substitution Facilitated by Enzymatic DNASynthesis
ChemBioChem Germain Niogret*, Alix Bouvier-Müller*, Chiara Figazzolo, Jack M. Joyce, Frédéric Bonhomme, Patrick England, Olena...
Selective control of transposable element expressionduring T cell exhaustion and anti–PD-1 treatment
Science Immunology Pierre-Emmanuel Bonté, Christina Metoikidou, Sandrine Heurtebise-Chretien, Yago A. Arribas, Aurélien Sutra Del Galy,...
CellWalker: a user-friendly and modular computationalpipeline for morphological analysis of microscopy images
Bioimage informatics Harshavardhan Khare*, Nathaly Dongo Mendoza*, Chiara Zurzolo Abstract The implementation of computational tools for...
Capsules and their traits shape phage susceptibility and plasmid conjugation efficiency
Nature Communications Matthieu Haudiquet, Julie Le Bris, Amandine Nucci, Rémy A. Bonnin, Pilar Domingo-Calap , Eduardo P. C. Rocha &...
Accurate Detection of Convergent Mutations in LargeProtein Alignments With ConDor
Genome Biol Evolution Marie Morel, Anna Zhukova, Frédéric Lemoine*, and Olivier Gascuel* Summary Evolutionary convergences are observed...
Clockor2: Inferring Global and Local Strict Molecular Clocks Using Root‑to‑Tip Regression
Software for Systematics and Evolution LEO A. FEATHERSTONE*, , ANDREW RAMBAUT, SEBASTIAN DUCHENE†, AND WYTAMMA WIRTH†, Abstract Molecular...
Source of SARS‑CoV‑2 infection: resultsfrom a series of 584,846 cases in Francefrom October 2020 to August 2022
BMC Public Health Arthur Rakover*, Simon Galmiche, Tiffany Charmet, Olivia Chény, Faïza Omar, Christophe David, Sophie Martin, Alexandra...
Comparing the Performance of Three Models Incorporating Weather Data to Forecast Dengue Epidemics in Reunion Island, 2018–2019
The Journal of Infectious Diseases Alessio Andronico, Luce Menudier, Henrik Salje, Muriel Vincent, Juliette Paireau, Henriette de Valk,...
JDLL: a library to run deep learning models on Java bioimage informatics platforms
Nature Methods Carlos GarcÃa López de Haro, Stéphane Dallongeville, Thomas Musset, Estibaliz Gómez-de-Mariscal, Daniel Sage, Wei Ouyang,...
CellWalker: a user-friendly and modular computationalpipeline for morphological analysis of microscopy images
Bioimage informatics Harshavardhan Khare*,†, Nathaly Dongo Mendoza,†, Chiara Zurzolo,* Summary The implementation of computational tools...
Ton motor conformational switch and peptidoglycan role in bacterial nutrient uptake
Nature Communications Maximilian Zinke, Maylis Lejeune, Ariel Mechaly, Benjamin Bardiaux, Ivo Gomperts Boneca, Philippe Delepelaire &...
Interrogating Aptamer Chemical Space Through ModifiedNucleotide Substitution Facilitated by Enzymatic DNASynthesis
ChemBioChem Germain Niogret+, Alix Bouvier-Müller+, Chiara Figazzolo, Jack M. Joyce, Frédéric Bonhomme, Patrick England, Olena...
Untargeted metagenomic sequencing identifies Toscanavirus in patients with idiopathic meningitis, southernSpain, 2015 to 2019
Eurosurveillance Fabiana Gámbaro, Ana Belén Pérez, Matthieu Prot, Eduardo Agüera, Artem Baidaliuk, MarÃa Paz Sánchez-Seco, Luis...
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