large-scale and user-friendly differential k-mer analyses
Bioinformatics Téo Lemane, Rayan Chikhi, Pierre Peterlongo Genome wide association studies elucidate links between genotypes and ...
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Oct 20, 2022
ShareLoc — an open platform for sharing localization microscopy data
Nat Methods Ouyang, W., Bai, J., Singh, M.K. et al. Single-molecule localization microscopy (SMLM) has matured into one of the most...
Aug 30, 2022
Domain Adapted Multi-task Learning For Segmenting Amoeboid Cells in Microscopy
IEEE Trans Med Imaging Mukherjee S, Sarkar R, Manich M, Labruyere E, Olivo-Marin JC The method proposed in this paper is a robust...
Aug 10, 2022
Griottes: a generalist tool for network generation from segmented tissue images
BMC Biol Ronteix G, Aristov A, Bonnet V, Sart S, Sobel J, Esposito E, Baroud CN Background: Microscopy techniques and image segmentation...
Apr 21, 2022
3D cell morphology detection by association for embryo heart morphogenesis
Biological Imaging Sarkar, R., Darby, D., Meilhac, S., & Olivo-Marin, J Advances in tissue engineering for cardiac regenerative medicine...
Mar 1, 2022
RNAglib: a python package for RNA 2.5 D graphs
Bioinformatics Mallet V, Oliver C, Broadbent J, Hamilton WL, Waldispühl J RNA 3D architectures are stabilized by sophisticated networks of...
Mar 1, 2022
InDeep: 3D fully convolutional neural networks to assist in silico drug design
Full title: InDeep: 3D fully convolutional neural networks to assist in silico drug design on protein-protein interactions Bioinformatics...
Jan 27, 2022
Vernal: a tool for mining fuzzy network motifs in RNA
Bioinformatics Oliver C, Mallet V, Philippopoulos P, Hamilton WL, Waldispühl J Motivation: RNA 3D motifs are recurrent substructures,...
May 30, 2021
Comparative genome analysis using sample-specific string detection in accurate long reads
Parsoa Khorsand, Luca Denti, Human Genome Structural Variant Consortium, Paola Bonizzoni, Rayan Chikhi, Fereydoun Hormozdiari...
Aug 24, 2020
Graph-Theoretic Barcode Ordering Model for Linked-Reads
WABI 2020 Dufresne Y, Sun C, Marijon P, Lavenier D, Chauve C, Chikhi R Considering a set of intervals on the real line, an interval...
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