Evolution | Inception

A Minimal yet Flexible Likelihood Framework to Assess Correlated Evolution

Systematic Biology Behdenna A, Godfroid M, Petot P, Pothier J, Lambert A, Achaz G An evolutionary process is reflected in the sequence...

Nutrient conditions are primary drivers of bacterial capsule maintenance in Klebsiella

Proc. R. Soc. B Buffet A, Rocha EPC, Rendueles O The fitness cost associated with the production of bacterial capsules is considered to...

Systematic detection of brain protein-coding genes under positive selection during primate evolution

--- Dumas G, Malesys S, Bourgeron T The human brain differs from that of other primates, but the genetic basis of these differences...

Community diversity and habitat structure shape the repertoire of extracellular proteins in bacteria

Nature Communications Marc Garcia-Garcera & Eduardo P. C. Rocha We test the hypothesis that the frequency and cost of extracellular...

Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes

Nucleic Acids Research Aude Bernheim, David Bikard, Marie Touchon, Eduardo P C Rocha Prokaryotes use CRISPR–Cas systems for adaptive...

Unlinked rRNA genes are widespread among bacteria and archaea

The ISME Journal Tess E. Brewer, Mads Albertsen, Arwyn Edwards, Rasmus H. Kirkegaard, Eduardo P. C. Rocha & Noah Fierer Ribosomes are...

Incorporating alignment uncertainty into Felsenstein’s phylogenetic bootstrap

Bioinformatics Chang JM, Floden EW, Herrero J, Gascuel O, Di Tommaso P, Notredame C Motivation Most evolutionary analyses are based on...