Molecular Characterization of Dengue Type 2 Outbreak in Pacific Islands Countries and Territories
Viruses Inizan C, O'Connor O, Worwor G, Cabemaiwai T, Grignon JC, Girault G, Minier M, Prot M, Ballan V, Pakoa G Jr, Grangeon JP, Guyant...
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Sep 21, 2020
Genuage: visualizing and analyzing multidimensional point cloud data in virtual reality
Nature Methods Thomas Blanc, Mohamed El Beheiry, Clément Caporal, Jean-Baptiste Masson, Bassam Hajj. The quantity of experimentally...
Sep 7, 2020
Disk Compression of k-mer Sets
WABI Rahman A, Chikhi R, Medvedev P K-mer based methods have become prevalent in many areas of bioinformatics. In applications such as...
Aug 25, 2020
Graph-Theoretic Barcode Ordering Model for Linked-Reads
WABI 2020 Dufresne Y, Sun C, Marijon P, Lavenier D, Chauve C, Chikhi R Considering a set of intervals on the real line, an interval...
Jul 24, 2020
DIVA: Natural Navigation Inside 3D Images Using Virtual Reality
J Mol Biol El Beheiry M, Godard C, Caporal C, Marcon V, Ostertag C, Sliti O, Doutreligne S, Fournier S, Hajj B, Dahan M, JB Masson. As...
Jul 22, 2020
Generalizing the Statistical Analysis of Objects’ Spatial Coupling in Bioimaging
IEEE Signal Processing Letters Mukherjee S, Gonzalez-Gomez C, Danglot L, Lagache T, Olivo-Marin JC We introduce a novel paradigm for...
Jul 10, 2020
Estimating the burden of SARS-CoV-2 in France
Science Henrik Salje, Cécile Tran Kiem, Noémie Lefrancq, Noémie Courtejoie, Paolo Bosetti, Juliette Paireau, Alessio Andronico,...
Jul 2, 2020
Introductions and early spread of SARS-CoV-2 in France, 24 January to 23 March 2020
Euro Surveill Gámbaro F, Behillil S, Baidaliuk A, Donati F, Albert M, Alexandru A, Vanpeene M, Bizard M, Brisebarre A, Barbet M, Derrar...
Jul 2, 2020
ARIAweb: a server for automated NMR structure calculation
Nucleic Acids Res Fabrice Allain, Fabien Mareuil, Hervé Ménager, Michael Nilges, Benjamin Bardiaux. Nuclear magnetic resonance (NMR)...
Jul 1, 2020
REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets
Bioinformatics Marchet C, Iqbal Z, Gautheret D, Salson M, Chikhi R. Motivation: In this work we present REINDEER, a novel computational...
Jul 1, 2020
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing
Brief Bioinform Lima L, Marchet C, Caboche S, da Silva C, Istace B, Aury JM, Touzet H, Chikhi R Motivation Nanopore long-read sequencing...
Jun 12, 2020
Phylogenetic background and habitat drive the genetic diversification of E. Coli
PLoS Genet Touchon M, Perrin A, de Sousa JAM, Vangchhia B, Burn S, O’Brien CL, Denamur E, Gordon D, Rocha EPC Escherichia coli is mostly...
Jun 5, 2020
Reconstructing Mayaro virus circulation in French Guiana shows frequent spillovers
Nat Commun Hozé N, Salje H, Rousset D, Fritzell C, Vanhomwegen J, Bailly S, Najm M, Enfissi A, Manuguerra JC, Flamand C, Cauchemez S...
Jun 1, 2020
Yacrd and fpa: upstream tools for long-read genome assembly
Bioinformatics Pierre Marijon, Rayan Chikhi, Jean-Stéphane Varré Motivation: Genome assembly is increasingly performed on long,...
Jun 1, 2020
Genomic Epidemiology of 2015-2016 Zika Virus Outbreak in Cape Verde
Emerg Infect Dis Faye O, de Lourdes Monteiro M, Vrancken B, Prot M, Lequime S, Diarra M, Ndiaye O, Valdez T, Tavarez S, Ramos J, Lda...
Jun 1, 2020
Structure and function of minor pilins of type IV pili
Med Microbiol Immunol Jacobsen T, Bardiaux B, Francetic O, Izadi‑Pruneyre N, Nilges M. Type IV pili are versatile and highly flexible...
May 11, 2020
A Framework to Monitor Changes in Transmission and Epidemiology of Emerging Pathogens
The Journal of Infectious Diseases Birgit Nikolay, Henrik Salje, A K M Dawlat Khan, Hossain M S Sazzad, Syed M Satter, Mahmudur Rahman,...
May 8, 2020
The major subunit of widespread competence pili exhibits a novel and conserved type IV pilin fold
J Biol Chem Sheppard D, Berry JL, Denise R, Rocha EPC, Matthews S, Pelicic V Type IV filaments (T4F), which are helical assemblies of...
May 1, 2020
A Darwinian Uncertainty Principle
Systematic Biology Olivier Gascuel, Mike Steel Reconstructing ancestral characters and traits along a phylogenetic tree is central to...
May 1, 2020
Zika Virus Circulation in Mali
Emerging Infectious Diseases Diarra I, Nurtop E, Sangaré AK, Sagara I, Pastorino B, Sacko S, Zeguimé A, Coulibaly D, Fofana B, Gallian...
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