Cluster of COVID-19 in northern France: A retrospective closed cohort study
MedRXiv Arnaud Fontanet, Laura Tondeur, Yoann Madec, Rebecca Grant, Camille Besombes, Nathalie Jolly, Sandrine Fernandes Pellerin,...
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Identification and molecular characterization of the first complete genome sequence
Scientific Reports Fernandez-Garcia MD, Simon-Loriere E, Kebe O, Sakuntabhai A, Ndiaye K Using a metagenomics approach, we have...
Efficiently Analysing Large Viral Data Sets in Computational Phylogenomics
Phylogenetics in the Genomic Era Zhukova A, Gascuel O, Duchene S, Ayres D, Lemey P, Baele G Viral evolutionary analyses are confronted...
A Genome-Wide CRISPR-Cas9 Screen Identifies the Dolichol-Phosphate Mannose Synthase Complex
J Virol Labeau A, Simon-Loriere E, Hafirassou ML, Bonnet-Madin L, Tessier S, Zamborlini A, Dupré T, Seta N, Schwartz O, Chaix ML,...
Statistical Tests for Force Inference in Heterogeneous Environments
Scientific Reports Alexander S. Serov, François Laurent, Charlotte Floderer, Karen Perronet, Cyril Favard, Delphine Muriaux, Nathalie...
JASS: command line and web interface for the joint analysis of GWAS results
Nar Genomics and Bioinformatics Julienne H, Lechat P, Guillemot V, Lasry C, Yao C, Araud R, Laville V, Vilhjalmsson B, Ménager H,...
Outbreak of Listeriosis in South Africa Associated with Processed Meat
N Engl J Med Thomas J, Govender N, McCarthy KM, Erasmus LK, Doyle TJ, Allam M, Ismail A, Ramalwa N, Sekwadi P, Ntshoe G, Shonhiwa A,...
Dynamics of livestock-associated methicillin resistant Staphylococcus aureus in pig movement network
Epidemics Bastard J, Andraud M, Chauvin C, Glaser P, Opatowski L, Temime L. Livestock-associated methicillin resistant Staphylococcus...
Community diversity and habitat structure shape the repertoire of extracellular proteins in bacteria
Nature Communications Marc Garcia-Garcera & Eduardo P. C. Rocha We test the hypothesis that the frequency and cost of extracellular...
Genome Assembly and Analysis of the North American Mountain Goat Species-Level Responses
G3 Genes Genomes Genetics Daria Martchenko, Rayan Chikhi, and Aaron B. A. Shafer The North American mountain goat (Oreamnos americanus)...
Determining Factors for Pertussis Vaccination Policy: A Study in Five EU Countries
Vaccines Wong A, Opinel A, Combes S JB, Toubiana J, Brisse S Pertussis vaccination policy varies across Europe, not only in the type of...
Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes
Nucleic Acids Research Aude Bernheim, David Bikard, Marie Touchon, Eduardo P C Rocha Prokaryotes use CRISPR–Cas systems for adaptive...
The epidemiology of hepatitis delta virus infection in Cameroon
Gut Camille Besombes, Richard Njouom, Juliette Paireau, Guillaume Lachenal, Gaëtan Texier, Mathurin Tejiokem, Simon Cauchemez, Jacques...
Improved inference of time-varying reproduction numbers during infectious disease outbreaks
Epidemics R.N. Thompson, J.E. Stockwin, R.D. van Gaalen, J.A. Polonsky, Z.N. Kamvar, P.A. Demarsh, E. Dahlqwist, S. Li, E. Miguel, T....
Impact of Zika Virus Emergence in French Guiana: A Large General Population Seroprevalence Survey
Journal of Infectious Diseases Flamand C, Bailly S, Fritzell C, Berthelot L, Vanhomwegen J, Salje H, Paireau J, Matheus S, Enfissi A,...
Determining factors for pertussis vaccination policy: A study in 5 EU countries
MedRXiv Anabelle Wong, Annick Opinel, Simon Jean-Baptiste Combes, Julie Toubiana, Sylvain Brisse Pertussis vaccination policy varies...
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