top of page
Reconstructing Mayaro virus circulation in French Guiana shows frequent spillovers
Nat Commun Hozé N, Salje H, Rousset D, Fritzell C, Vanhomwegen J, Bailly S, Najm M, Enfissi A, Manuguerra JC, Flamand C, Cauchemez S...
Jun 4, 2020
Yacrd and fpa: upstream tools for long-read genome assembly
Bioinformatics Pierre Marijon, Rayan Chikhi, Jean-Stéphane Varré Motivation: Genome assembly is increasingly performed on long,...
May 31, 2020
Genomic Epidemiology of 2015-2016 Zika Virus Outbreak in Cape Verde
Emerg Infect Dis Faye O, de Lourdes Monteiro M, Vrancken B, Prot M, Lequime S, Diarra M, Ndiaye O, Valdez T, Tavarez S, Ramos J, Lda...
May 31, 2020
Structure and function of minor pilins of type IV pili
Med Microbiol Immunol Jacobsen T, Bardiaux B, Francetic O, Izadi‑Pruneyre N, Nilges M. Type IV pili are versatile and highly flexible...
May 31, 2020
A Framework to Monitor Changes in Transmission and Epidemiology of Emerging Pathogens
The Journal of Infectious Diseases Birgit Nikolay, Henrik Salje, A K M Dawlat Khan, Hossain M S Sazzad, Syed M Satter, Mahmudur Rahman,...
May 10, 2020
The major subunit of widespread competence pili exhibits a novel and conserved type IV pilin fold
J Biol Chem Sheppard D, Berry JL, Denise R, Rocha EPC, Matthews S, Pelicic V Type IV filaments (T4F), which are helical assemblies of...
May 7, 2020
A Darwinian Uncertainty Principle
Systematic Biology Olivier Gascuel, Mike Steel Reconstructing ancestral characters and traits along a phylogenetic tree is central to...
Apr 30, 2020
Zika Virus Circulation in Mali
Emerging Infectious Diseases Diarra I, Nurtop E, Sangaré AK, Sagara I, Pastorino B, Sacko S, Zeguimé A, Coulibaly D, Fofana B, Gallian...
Apr 30, 2020
Novel genome sequences of cell-fusing agent virus allow comparison of virus phylogeny
Virus Evol Baidaliuk A, Lequime S, Moltini-Conclois I, Dabo S, Dickson LB, Prot M, Duong V, Dussart P, Boyer S, Shi C, Matthijnssens J,...
Apr 28, 2020
Cluster of COVID-19 in northern France: A retrospective closed cohort study
MedRXiv Arnaud Fontanet, Laura Tondeur, Yoann Madec, Rebecca Grant, Camille Besombes, Nathalie Jolly, Sandrine Fernandes Pellerin,...
Apr 22, 2020
Identification and molecular characterization of the first complete genome sequence
Scientific Reports Fernandez-Garcia MD, Simon-Loriere E, Kebe O, Sakuntabhai A, Ndiaye K Using a metagenomics approach, we have...
Apr 20, 2020
Efficiently Analysing Large Viral Data Sets in Computational Phylogenomics
Phylogenetics in the Genomic Era Zhukova A, Gascuel O, Duchene S, Ayres D, Lemey P, Baele G Viral evolutionary analyses are confronted...
Apr 14, 2020
FHL1 is a major host factor for chikungunya virus infection
Nature Meertens L, Hafirassou ML, Couderc T, Bonnet-Madin L, Kril V, Kümmerer BM, Labeau A, Brugier A, Simon-Loriere E, Burlaud-Gaillard...
Mar 20, 2020
A Genome-Wide CRISPR-Cas9 Screen Identifies the Dolichol-Phosphate Mannose Synthase Complex
J Virol Labeau A, Simon-Loriere E, Hafirassou ML, Bonnet-Madin L, Tessier S, Zamborlini A, Dupré T, Seta N, Schwartz O, Chaix ML,...
Mar 17, 2020
Statistical Tests for Force Inference in Heterogeneous Environments
Scientific Reports Alexander S. Serov, François Laurent, Charlotte Floderer, Karen Perronet, Cyril Favard, Delphine Muriaux, Nathalie...
Mar 2, 2020
JASS: command line and web interface for the joint analysis of GWAS results
Nar Genomics and Bioinformatics Julienne H, Lechat P, Guillemot V, Lasry C, Yao C, Araud R, Laville V, Vilhjalmsson B, Ménager H,...
Mar 1, 2020
Outbreak of Listeriosis in South Africa Associated with Processed Meat
N Engl J Med Thomas J, Govender N, McCarthy KM, Erasmus LK, Doyle TJ, Allam M, Ismail A, Ramalwa N, Sekwadi P, Ntshoe G, Shonhiwa A,...
Feb 13, 2020
Dynamics of livestock-associated methicillin resistant Staphylococcus aureus in pig movement network
Epidemics Bastard J, Andraud M, Chauvin C, Glaser P, Opatowski L, Temime L. Livestock-associated methicillin resistant Staphylococcus...
Feb 9, 2020
Community diversity and habitat structure shape the repertoire of extracellular proteins in bacteria
Nature Communications Marc Garcia-Garcera & Eduardo P. C. Rocha We test the hypothesis that the frequency and cost of extracellular...
Feb 6, 2020
Genome Assembly and Analysis of the North American Mountain Goat Species-Level Responses
G3 Genes Genomes Genetics Daria Martchenko, Rayan Chikhi, and Aaron B. A. Shafer The North American mountain goat (Oreamnos americanus)...
Feb 1, 2020
bottom of page