Aug 25, 2020Graph-Theoretic Barcode Ordering Model for Linked-ReadsWABI 2020 Dufresne Y, Sun C, Marijon P, Lavenier D, Chauve C, Chikhi R Considering a set of intervals on the real line, an interval...
Jul 2, 2020ARIAweb: a server for automated NMR structure calculationNucleic Acids Res Fabrice Allain, Fabien Mareuil, Hervé Ménager, Michael Nilges, Benjamin Bardiaux. Nuclear magnetic resonance (NMR)...
Jul 1, 2020REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasetsBioinformatics Marchet C, Iqbal Z, Gautheret D, Salson M, Chikhi R. Motivation: In this work we present REINDEER, a novel computational...
Jul 1, 2020Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing Brief Bioinform Lima L, Marchet C, Caboche S, da Silva C, Istace B, Aury JM, Touzet H, Chikhi R Motivation Nanopore long-read sequencing...
Jun 1, 2020Yacrd and fpa: upstream tools for long-read genome assemblyBioinformatics Pierre Marijon, Rayan Chikhi, Jean-Stéphane Varré Motivation: Genome assembly is increasingly performed on long,...